Holomycota

Clade containing fungi and some protists

Holomycota
Temporal range: Middle Ordovician – Present 460–0 Ma
PreꞒ
O
S
D
C
P
T
J
K
Pg
N
Nuclearia
Scientific classification Edit this classification
Domain: Eukaryota
Clade: Amorphea
Clade: Obazoa
(unranked): Opisthokonta
Clade: Holomycota
Liu et al., 2009
Groups[1]
Synonyms
  • Nucletmycea Brown et al. 2009[2]
  • Holofungi
  • Fungida

Holomycota or Nucletmycea are a basal Opisthokont clade as sister of the Holozoa. It consists of the Cristidiscoidea and the kingdom Fungi. The position of nucleariids, unicellular free-living phagotrophic amoebae,[3] as the earliest lineage of Holomycota suggests that animals and fungi independently acquired complex multicellularity from a common unicellular ancestor and that the osmotrophic lifestyle (one of the fungal hallmarks) was originated later in the divergence of this eukaryotic lineage. Opisthosporidians is a recently proposed taxonomic group that includes aphelids,[4] Microsporidia and Cryptomycota, three groups of endoparasites.[5]

Rozella (Cryptomycota) is the earliest diverging fungal genus in which chitin has been observed at least in some stages of their life cycle,[5] although the chitinous cell wall (another fungal hallmark) and osmotrophy originated in a common ancestor of Blastocladiomycota and Chytridiomycota, which still contain some ancestral characteristics such as the flagellum in zoosporic stage.[6] The groups of fungi with the characteristic hyphal growth, Zoopagomycota, Mucoromycotina and Dikarya, originated from a common ancestor ~700 Mya.[6] Zoopagomycota are mostly pathogens of animals or other fungi, Mucoromycotina is a more diverse group including parasites, saprotrophs or ectomycorrhizal.[5] Dikarya is the group embracing Ascomycota and Basidiomycota, which comprise ~98% of the described fungal species.[6] Because of this rich diversity, Dikarya includes highly morphologically distinct groups, from hyphae or unicellular yeasts (such as the model organism Saccharomyces cerevisiae) to the complex multicellular fungi popularly known as mushrooms.[6] Contrary to animals and land plants with complex multicellularity, the inferred phylogenetic relationships indicate that fungi acquired and lost multicellularity multiple times along Ascomycota and Basidiomycota evolution.[7]

Phylogeny

The phylogenetic tree depicts the fungi and their close relationship to other organisms, based on the work of Philippe Silar[8] and "The Mycota: A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research".[9][10] The holomycota tree is following Tedersoo et al.[11][12][13]

References

  1. ^ Adl, Sina M.; Simpson, Alastair G. B.; Lane, Christopher E.; Lukeš, Julius; Bass, David; Bowser, Samuel S.; Brown, Matthew W.; Burki, Fabien; Dunthorn, Micah; Hampl, Vladimir; Heiss, Aaron; Hoppenrath, Mona; Lara, Enrique; Le Gall, Line; Lynn, Denis H.; McManus, Hilary; Mitchell, Edward A. D.; Mozley-Stanridge, Sharon E.; Parfrey, Laura W.; Pawlowski, Jan; Rueckert, Sonja; Shadwick, Laura; Schoch, Conrad L.; Smirnov, Alexey; Spiegel, Frederick W. (2012). "The Revised Classification of Eukaryotes". Journal of Eukaryotic Microbiology. 59 (5): 429–514. doi:10.1111/j.1550-7408.2012.00644.x. PMC 3483872. PMID 23020233.
  2. ^ Brown MW, Spiegel FW, Silberman JD (December 2009). "Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta". Mol. Biol. Evol. 26 (12): 2699–709. doi:10.1093/molbev/msp185. PMID 19692665.
  3. ^ López‐Escardó, David; López‐García, Purificación; Moreira, David; Ruiz‐Trillo, Iñaki; Torruella, Guifré (2017-08-12). "Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta)". Journal of Eukaryotic Microbiology. 65 (2): 170–179. doi:10.1111/jeu.12450. ISSN 1550-7408. PMC 5708529. PMID 28741861.
  4. ^ Karpov, Sergey; Mamkaeva, Maria A.; Aleoshin, Vladimir; Nassonova, Elena; Lilje, Osu; Gleason, Frank H. (2014). "Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia". Frontiers in Microbiology. 5: 112. doi:10.3389/fmicb.2014.00112. PMC 3975115. PMID 24734027.
  5. ^ a b c Berbee, Mary L.; James, Timothy Y.; Strullu-Derrien, Christine (2017-09-08). "Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life". Annual Review of Microbiology. 71 (1): 41–60. doi:10.1146/annurev-micro-030117-020324. PMID 28525299.
  6. ^ a b c d Stajich, Jason E.; Berbee, Mary L.; Blackwell, Meredith; Hibbett, David S.; James, Timothy Y.; Spatafora, Joseph W.; Taylor, John W. (2009-09-29). "The Fungi". Current Biology. 19 (18): R840–R845. doi:10.1016/j.cub.2009.07.004. PMC 2913116. PMID 19788875.
  7. ^ Nguyen, Tu Anh; Cissé, Ousmane H.; Wong, Jie Yun; Zheng, Peng; Hewitt, David; Nowrousian, Minou; Stajich, Jason E.; Jedd, Gregory (2017-02-08). "Innovation and constraint leading to complex multicellularity in the Ascomycota". Nature Communications. 8: ncomms14444. Bibcode:2017NatCo...814444N. doi:10.1038/ncomms14444. PMC 5309816. PMID 28176784.
  8. ^ Silar P (2016). Protistes Eucaryotes: Origine, Evolution et Biologie des Microbes Eucaryotes. HAL. p. 462. ISBN 978-2-9555841-0-1.
  9. ^ Esser K (2014). The Mycota VII A: Systematics and Evolution (2nd ed.). Springer. p. 461. ISBN 978-3-642-55317-2.
  10. ^ Bass, David; Czech, Lucas; Williams, Bryony A. P.; Berney, Cédric; Dunthorn, Micah; Mahé, Frederic; Torruella, Guifré; Stentiford, Grant D.; Williams, Tom A. (2018-04-28). "Clarifying the Relationships between Microsporidia and Cryptomycota". Journal of Eukaryotic Microbiology. 65 (6): 773–782. doi:10.1111/jeu.12519. ISSN 1066-5234. PMC 6282948. PMID 29603494.
  11. ^ Tedersoo, Leho; Sánchez-Ramírez, Santiago; Kõljalg, Urmas; Bahram, Mohammad; Döring, Markus; Schigel, Dmitry; May, Tom; Ryberg, Martin; Abarenkov, Kessy (2018). "High-level classification of the Fungi and a tool for evolutionary ecological analyses". Fungal Diversity. 90 (1): 135–159. doi:10.1007/s13225-018-0401-0. hdl:10138/238983. ISSN 1560-2745.
  12. ^ Lopez-Garcia, Purificacion; Volcker, Eckhard; Sebe-Pedros, Arnau; Burns, John; Karpov, Sergey A.; Moreira, David; Grau-Bove, Xavier; Torruella, Guifre (2018-08-17). "The aphelid-like phagotrophic origins of fungi". bioRxiv: 233882. doi:10.1101/233882.
  13. ^ Galindo, Luis Javier; Torruella, Guifré; López-García, Purificación; Ciobanu, Maria; Gutiérrez-Preciado, Ana; Karpov, Sergey A; Moreira, David (2022-07-28). "Phylogenomics Supports the Monophyly of Aphelids and Fungi and Identifies New Molecular Synapomorphies". Systematic Biology.
  • v
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Eukaryote classification
Domain
Archaea
Bacteria
Eukaryota
(major groups
Excavata
Diaphoretickes
Hacrobia
Rhizaria
Alveolata
Stramenopiles
Plants
Amorphea
Amoebozoa
Opisthokonta
Animals
Fungi)
Amorphea
Amoebozoa
   Obazoa   
Opisthokonta
Holomycota
   Holozoa   
Filozoa
Choanozoa
Diaphoretickes
Haptista
    TSAR    
     SAR     
Rhizaria
Alveolata
Myzozoa
Stramenopiles
Bigyra
Gyrista
     CAM     
Pan-Cryptista
Cryptista
Archaeplastida
Viridiplantae
(Plants sensu lato)
Streptophyta
Excavates*
Discoba
Discicristata
Metamonada
Malawimonada
Incertae sedis
Hemimastigophora
Ancyromonadida
  • Ancyromonadidae
  • Planomonadidae
CRuMs
  • ¹traditional kingdoms excluded from protists
  • *paraphyletic groups
  • bold denotes groups with over 1,000 species
  • v
  • t
  • e
Domain
Archaea
Bacteria
Eukaryota
(major groups
Excavata
Diaphoretickes
Hacrobia
Rhizaria
Alveolata
Stramenopiles
Plants
Amorphea
Amoebozoa
Opisthokonta
Animals
Fungi)
Holomycota
Cristidiscoidea
Nuclearida
Nuclearidea
Nucleariida
Fonticulida
Fonticulea
Fonticulida
Fungi
Rozellomyceta
Rozellomycota
Rozellomycetes
Rozellida
Morellosporales
  • Mitosporidiaceae
  • Morellosporaceae
Nucleophagales
Paramicrosporidiales
  • Paramicrosporidiaceae
Microsporidia
Chytridiopsidea
Chytridiopsida
Metchnikovellea
Metchnikovellida
  • Amphiacanthidae
  • Metchnikovellidae
Microsporea
  • Abelsporidae
  • Burenelloidea
  • Burkeidae
  • Cougourdellidae
  • Cylindrosporidae
  • Duboscqiidae
  • Golbergiidae
  • Microfilidae
  • Neonosemoidiidae
  • Pleistosporidiidae
  • Pseudopleistophoridae
  • Striatosporidae
  • Telomyxidae
  • Toxoglugeidae
Amblyosporida
  • Amblyosporidae
  • Caudosporidae
  • Gurleyidae
Glugeida
  • Facilisporidae
  • Glugeidae
  • Myosporidae
  • Pereziidae
  • Pleistophoridae
  • Spragueidae
  • Thelohaniidae
  • Tuzetiidae
  • Unikaryonidae
Neopereziida
  • Fibrillasporidae
  • Janacekiidae
  • Neopereziidae
  • Tubulinosematidae
Nosematida
  • Encephalitozoonidae
  • Enterocytozoonidae
  • Heterovesiculidae
  • Mrazekiidae
  • Nosematidae
  • Ordosporidae
Ovavesiculida
  • Ovavesiculidae
Aphelidiomyceta
Aphelidiomycota
Aphelidea
Aphelidiales
Eumycota
(True Fungi)
Ichthyosporida
Ichthyosporea
Dermocystida
  • Dermocystidiaceae
Ichthyophonida
Sphaeroformina
  • Creolimacidae
  • Piridae
  • Psorospermidae
Trichomycina
Pluriformea
Corallochytrea
Corallochytriida
Filozoa
Filasterozoa
Filasterea
Ministeriida
Choanozoa
Choanoflagellata
Choanoflagellatea
Acanthoecida
Craspedida
Metazoa (Animalia)
Sources and alternative views: Wikispecies.
Taxon identifiers
Holomycota